In [10]:

    

%matplotlib inline


    

In [11]:

    

cd ~/workspace/NetworKit/benchmark/


    

    




/Users/cls/workspace/NetworKit/benchmark

In [12]:

    

from Benchmark import *


    

In [12]:

    




    

In [13]:

    

allGraphs = ["PGPgiantcompo", "power", "caidaRouterLevel"]


    

In [49]:

    

from scipy import stats
d1 = stats.norm(0, 5).rvs(100)
d2 = numpy.concatenate([stats.gamma(4).rvs(50),
                     -1 * stats.gamma(4).rvs(50)])
d3 = numpy.concatenate([stats.gamma(4).rvs(50),
                     -1 * stats.gamma(4).rvs(50)])
data = pandas.DataFrame(dict(d1=d1, d2=d2, d3=d3, d4=d3, d5=d3, d6=d3))


    

In [65]:

    

seaborn.boxplot(data, linewidth=1.5, widths=.25, color=seaborn.xkcd_rgb["red orange"], vert=False);


    

In [57]:

    

seaborn.boxplot?


    

In [14]:

    

graphMeta(allGraphs, graphDir="/Users/cls/workspace/Data/NwkBenchmark/")


    

    
Out[14]:






  

    

      

      
name
      
n
      
m
    
  
  

    

      
0
      
    PGPgiantcompo
      
  10680
      
  24316
    
    

      
1
      
            power
      
   4941
      
   6594
    
    

      
2
      
 caidaRouterLevel
      
 192244
      
 609066
    
  

In [15]:

    

#bench = Bench()


    

In [16]:

    

nkdata = {}


    

In [17]:

    

%time nkdata["ConnectedComponents"] = algoBenchmark(nk.bConnectedComponents(), allGraphs)


    

    




benchmarking ConnectedComponents
loading PGPgiantcompo
loading power
loading caidaRouterLevel
CPU times: user 1.73 s, sys: 76.1 ms, total: 1.81 s
Wall time: 1.82 s

In [18]:

    

timePlot(nkdata["ConnectedComponents"])


    

In [19]:

    

%time nkdata["ParallelConnectedComponents"] = algoBenchmark(nk.bParallelConnectedComponents(), allGraphs)


    

    




benchmarking ParallelConnectedComponents
loading PGPgiantcompo
loading power
loading caidaRouterLevel
CPU times: user 1.84 s, sys: 73 ms, total: 1.91 s
Wall time: 1.55 s

In [20]:

    

timePlot(averageRuns(nkdata["ParallelConnectedComponents"]))


    

In [21]:

    

%time nkdata["Diameter"] = algoBenchmark(nk.bDiameter(), ["PGPgiantcompo", "power", "caidaRouterLevel"]))


    

    




  File "<unknown>", line 1
    nkdata["Diameter"] = algoBenchmark(nk.bDiameter(), ["PGPgiantcompo", "power", "caidaRouterLevel"]))
                                                                                                      ^
SyntaxError: invalid syntax

In [ ]:

    

timePlot(averageRuns(nkdata["Diameter"]))


    

In [ ]:

    

#data["Betweenness"] = averageRuns(benchmark(nk.bBetweenness(), ["power"]))


    

In [ ]:

    

#timePlot(data["Betweenness"])


    

In [ ]:

    

#saveData(pandas.DataFrame(nkdata["ConnectedComponents"]), "nkdata")


    

In [ ]:

    

nxdata = {}


    

In [ ]:

    

%time nxdata["ConnectedComponents"] = benchmark(nx.bConnectedComponents(), allGraphs)


    

In [ ]:

    

timePlot(averageRuns(nxdata["ConnectedComponents"]))


    

In [ ]: